SNP Report
Basic Infomation
| Name | rs11656039 dbSNP |
|---|---|
| Location | chr:17,5439561 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 50)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11078567 | 0.84[AMR][1000 genomes] |
| rs11078569 | 0.84[AMR][1000 genomes] |
| rs11078570 | 0.91[AMR][1000 genomes] |
| rs11650380 | 0.84[AMR][1000 genomes] |
| rs11652692 | 0.84[AMR][1000 genomes] |
| rs11653197 | 0.84[AMR][1000 genomes] |
| rs11653654 | 0.84[AMR][1000 genomes] |
| rs11654999 | 0.89[AFR][1000 genomes] |
| rs11656036 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11656040 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11657249 | 0.84[AMR][1000 genomes] |
| rs11657416 | 0.84[AMR][1000 genomes] |
| rs11657747 | 0.91[AMR][1000 genomes] |
| rs11658716 | 0.84[AMR][1000 genomes] |
| rs12150026 | 0.84[AMR][1000 genomes] |
| rs12150286 | 0.84[AMR][1000 genomes] |
| rs12150289 | 0.84[AMR][1000 genomes] |
| rs12150292 | 0.84[AMR][1000 genomes] |
| rs12937062 | 0.91[AMR][1000 genomes] |
| rs12937100 | 0.81[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs12937334 | 0.91[AMR][1000 genomes] |
| rs12940290 | 0.81[AFR][1000 genomes] |
| rs12940946 | 0.84[AMR][1000 genomes] |
| rs12942931 | 0.91[AMR][1000 genomes] |
| rs12950024 | 0.84[AMR][1000 genomes] |
| rs34198160 | 0.84[AMR][1000 genomes] |
| rs34273465 | 0.84[AMR][1000 genomes] |
| rs34402930 | 0.84[AMR][1000 genomes] |
| rs34634632 | 0.84[AMR][1000 genomes] |
| rs34878096 | 0.84[AMR][1000 genomes] |
| rs34885369 | 0.84[AMR][1000 genomes] |
| rs35291181 | 0.81[AFR][1000 genomes] |
| rs35410467 | 0.84[AMR][1000 genomes] |
| rs35548793 | 0.81[AFR][1000 genomes] |
| rs35665358 | 0.84[AMR][1000 genomes] |
| rs35913493 | 0.84[AMR][1000 genomes] |
| rs36089653 | 0.84[AMR][1000 genomes] |
| rs36179145 | 0.81[AFR][1000 genomes] |
| rs71362567 | 0.84[AMR][1000 genomes] |
| rs71368557 | 0.81[AFR][1000 genomes] |
| rs7207278 | 0.84[AMR][1000 genomes] |
| rs7207641 | 0.84[AMR][1000 genomes] |
| rs7215868 | 0.84[AMR][1000 genomes] |
| rs7216010 | 0.84[AMR][1000 genomes] |
| rs7223362 | 0.84[AMR][1000 genomes] |
| rs7223514 | 0.84[AMR][1000 genomes] |
| rs7224061 | 0.84[AMR][1000 genomes] |
| rs7224071 | 0.84[AMR][1000 genomes] |
| rs7226185 | 0.81[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs8070450 | 0.81[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NLRP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014