SNP Report
Basic Infomation
| Name | rs11264318 dbSNP |
|---|---|
| Location | chr:1,155083717 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10796938 | 0.93[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11264305 | 0.90[YRI][hapmap] |
| rs11264312 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11264313 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11264314 | 1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11264319 | 1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs11581730 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11583762 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1462855 | 0.82[CEU][hapmap] |
| rs1870939 | 0.81[AMR][1000 genomes] |
| rs4625273 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs4745 | 0.81[CEU][hapmap] |
| rs56112907 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6427158 | 1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6693477 | 1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7364869 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7365544 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7366355 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7367897 | 0.95[CEU][hapmap] |
| rs7368345 | 1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7534162 | 0.81[CEU][hapmap];0.82[AMR][1000 genomes] |
| rs7546746 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7548955 | 1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KRTCAP2 | Distal transcriptional regulation |
| DPM3 | Distal transcriptional regulation |
| TRIM46 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014