SNP Report
Basic Infomation
| Name | rs11260568 dbSNP |
|---|---|
| Location | chr:1,1195690 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12066047 | 0.95[ASN][1000 genomes] |
| rs12069094 | 1.00[EUR][1000 genomes] |
| rs12070338 | 0.93[ASN][1000 genomes] |
| rs12072310 | 0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs12073801 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12077700 | 1.00[GIH][hapmap] |
| rs3753340 | 1.00[GIH][hapmap];1.00[TSI][hapmap] |
| rs41307035 | 0.87[ASN][1000 genomes] |
| rs57834430 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6662635 | 1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs72894077 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7547316 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7547329 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs7552460 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| UBE2J2 | Proximal transcriptional regulation |
| AGRN | Distal transcriptional regulation |
| SDF4 | Distal transcriptional regulation |
| B3GALT6 | Distal transcriptional regulation |
| UBE2J2 | Distal transcriptional regulation |
| UBE2J2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014