SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 23)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10897226	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10897227	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10897228	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11230921	0.83[EUR][1000 genomes]
rs11230950	0.99[EUR][1000 genomes]
rs11230970	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12223548	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1540185	0.93[EUR][1000 genomes]
rs1614060	0.82[EUR][1000 genomes]
rs1629983	0.90[EUR][1000 genomes]
rs1675122	0.93[EUR][1000 genomes]
rs1675124	0.81[EUR][1000 genomes]
rs1675125	0.82[EUR][1000 genomes]
rs1675126	0.85[EUR][1000 genomes]
rs1792886	0.92[EUR][1000 genomes]
rs1792888	0.88[EUR][1000 genomes]
rs1792920	0.92[EUR][1000 genomes]
rs1792922	0.88[EUR][1000 genomes]
rs2853012	0.82[EUR][1000 genomes]
rs3781971	0.83[EUR][1000 genomes]
rs3915609	0.92[EUR][1000 genomes]
rs4601791	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7119240	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SCGB1D1	Proximal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)