SNP Report
Basic Infomation
| Name | rs2853012 dbSNP |
|---|---|
| Location | chr:11,61969536 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897226 | 0.85[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes] |
| rs10897227 | 0.82[EUR][1000 genomes] |
| rs10897228 | 0.82[EUR][1000 genomes] |
| rs10897229 | 0.82[EUR][1000 genomes] |
| rs11230921 | 0.85[CEU][hapmap] |
| rs11230950 | 0.91[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs11230970 | 0.82[EUR][1000 genomes] |
| rs12223548 | 0.82[EUR][1000 genomes] |
| rs1614060 | 0.85[CEU][hapmap] |
| rs1675124 | 0.85[CEU][hapmap] |
| rs1675126 | 0.85[CEU][hapmap] |
| rs1792886 | 0.83[TSI][hapmap] |
| rs1792888 | 0.83[TSI][hapmap] |
| rs4601791 | 0.81[EUR][1000 genomes] |
| rs7119240 | 0.82[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SCGB2A1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014