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rVarBase
SNP Report
Basic Infomation
Name
rs10897167  
dbSNP
Location
chr:11,61291922
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11600886
1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs12787061
1.00[CEU][hapmap]
rs2908206
1.00[CEU][hapmap];0.94[GIH][hapmap];0.83[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3019202
1.00[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117496
1.00[ASN][1000 genomes]
rs71490327
1.00[ASN][1000 genomes]
rs71490328
1.00[ASN][1000 genomes]
rs72914269
1.00[ASN][1000 genomes]
rs72920160
1.00[ASN][1000 genomes]
rs7936573
0.88[GIH][hapmap];0.85[AMR][1000 genomes]
rSNP related genes
Symbol
Regulation type
SYT7
Proximal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
eQTL related gene
Source
VPS37C
seeQTL