SNP Report
Basic Infomation
| Name | rs7117496 dbSNP |
|---|---|
| Location | chr:11,61257423 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897163 | 0.82[EUR][1000 genomes] |
| rs10897167 | 1.00[ASN][1000 genomes] |
| rs11600325 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs11600460 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11600685 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11600886 | 1.00[ASN][1000 genomes] |
| rs11605595 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12785998 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12787061 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17156101 | 0.95[EUR][1000 genomes] |
| rs2908206 | 1.00[ASN][1000 genomes] |
| rs3019202 | 1.00[ASN][1000 genomes] |
| rs35024032 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs71490327 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71490328 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72914269 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PPP1R32 | Distal transcriptional regulation |
| ENSG00000255931 | Distal transcriptional regulation |
| MIR4488 | Distal transcriptional regulation |
| LRRC10B | Distal transcriptional regulation |
| PPP1R32 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014