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rVarBase
SNP Report
Basic Infomation
Name
rs10858004  
dbSNP
Location
chr:1,114092306
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11102660
0.82[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs11588901
0.82[EUR][1000 genomes]
rs11802041
1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12026423
0.87[CEU][hapmap];0.81[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs12065882
1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12119076
0.86[ASN][1000 genomes]
rs12129076
0.86[ASN][1000 genomes]
rs1343126
1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs7515189
0.96[TSI][hapmap]
rs7518766
0.82[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
MAGI3
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
eQTL related gene
Source
GADD45A
seeQTL
MAGI3
SCAN
PHTF1
SCAN