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rVarBase
SNP Report
Basic Infomation
Name
rs11102660  
dbSNP
Location
chr:1,114150717
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10858004
0.82[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs11588901
1.00[ASN][1000 genomes]
rs12026423
0.89[TSI][hapmap]
rs12065882
0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs12117799
1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs61819363
1.00[ASN][1000 genomes]
rs61819372
1.00[ASN][1000 genomes]
rs61819425
1.00[ASN][1000 genomes]
rs72650671
1.00[ASN][1000 genomes]
rs72687967
1.00[ASN][1000 genomes]
rs7515189
0.81[CEU][hapmap];0.95[GIH][hapmap];0.86[MEX][hapmap];0.96[TSI][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
MAGI3
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
eQTL related gene
Source
ANKRD36B
SCAN
MAGI3
SCAN
PHTF1
SCAN