SNP Report
Basic Infomation
| Name | rs957258 dbSNP |
|---|---|
| Location | chr:14,69155283 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12436378 | 0.84[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs1274761 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1274762 | 1.00[CHB][hapmap];0.90[CHD][hapmap] |
| rs12895574 | 0.84[CEU][hapmap];0.83[MEX][hapmap];0.81[EUR][1000 genomes] |
| rs17756914 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs194763 | 0.82[ASW][hapmap] |
| rs194781 | 0.82[ASW][hapmap] |
| rs194782 | 0.82[ASW][hapmap] |
| rs34720143 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs440489 | 0.82[ASW][hapmap] |
| rs56273152 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs7147855 | 0.89[CEU][hapmap];0.87[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000242941 | Proximal transcriptional regulation |
| ENSG00000258623 | Proximal transcriptional regulation |
| ENSG00000242941 | Distal transcriptional regulation |
| ENSG00000258623 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014