SNP Report
Basic Infomation
| Name | rs9442385 dbSNP |
|---|---|
| Location | chr:1,1097335 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1539634 | 0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1539635 | 0.81[ASN][1000 genomes] |
| rs1539636 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1539637 | 0.81[CHB][hapmap] |
| rs1891905 | 0.82[CEU][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes] |
| rs4970357 | 0.81[JPT][hapmap] |
| rs4970362 | 0.82[CHD][hapmap];0.86[JPT][hapmap] |
| rs56863140 | 0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6604973 | 0.90[ASN][1000 genomes] |
| rs74045133 | 0.93[AFR][1000 genomes] |
| rs74045138 | 0.93[AFR][1000 genomes] |
| rs9442361 | 0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9442384 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9660710 | 1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TTLL10 | Distal transcriptional regulation |
| TNFRSF4 | Distal transcriptional regulation |
| ENSG00000223823 | Distal transcriptional regulation |
| SDF4 | Distal transcriptional regulation |
| B3GALT6 | Distal transcriptional regulation |
| AGRN | Distal transcriptional regulation |
| ENSG00000217801 | Distal transcriptional regulation |
| RNF223 | Distal transcriptional regulation |
| TNFRSF18 | Distal transcriptional regulation |
| UBE2J2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014