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rVarBase
SNP Report
Basic Infomation
Name
rs1539637  
dbSNP
Location
chr:1,1080925
Allele
G/A/C
LD-proxy of rSNPs(r
2
>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10907182
0.81[CHB][hapmap]
rs4512588
0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4970357
0.86[JPT][hapmap]
rs4970362
0.87[CHB][hapmap]
rs9442385
0.81[CHB][hapmap]
rSNP related genes
Symbol
Regulation type
SDF4
Distal transcriptional regulation
B3GALT6
Distal transcriptional regulation
C1orf159
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)