SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 13)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1551397	0.88[CEU][hapmap];0.85[CHB][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1551398	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.98[GIH][hapmap];0.88[LWK][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1551399	0.96[CEU][hapmap];0.85[CHB][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1551400	0.88[CEU][hapmap];0.85[CHB][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28510097	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4380956	0.80[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap]
rs4871611	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.98[GIH][hapmap];0.88[LWK][hapmap];0.83[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55867617	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7002027	0.90[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs7005585	0.85[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs7005992	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs7818434	0.80[CHB][hapmap]
rs921721	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000253111	Proximal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 1)