SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 13)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10900805	0.81[JPT][hapmap]
rs156112	0.87[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs162884	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs162885	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs162893	0.87[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs162895	0.87[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2292259	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs334905	0.87[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs366512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs392707	0.89[ASN][1000 genomes]
rs453602	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs513931	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs685520	1.00[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
P4HA2	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)