SNP Report
Basic Infomation
| Name | rs453602 dbSNP |
|---|---|
| Location | chr:5,131587064 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10900805 | 0.81[JPT][hapmap] |
| rs156112 | 0.93[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs162884 | 1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs162885 | 1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs162893 | 0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs162895 | 0.93[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2292259 | 1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs334905 | 0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs366512 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs392707 | 0.96[ASN][1000 genomes] |
| rs513931 | 1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs685520 | 1.00[EUR][1000 genomes] |
| rs907367 | 0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PDLIM4 | Distal transcriptional regulation |
| P4HA2 | Distal transcriptional regulation |
| IRF1 | Distal transcriptional regulation |
| SLC22A4 | Distal transcriptional regulation |
| P4HA2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014