SNP Report
Basic Infomation
| Name | rs897877 dbSNP |
|---|---|
| Location | chr:2,219192755 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 42)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1017698 | 0.84[CHB][hapmap] |
| rs10193189 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.84[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs10194082 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10203039 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10932766 | 0.85[CEU][hapmap] |
| rs10932774 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10932775 | 0.82[GIH][hapmap] |
| rs11554825 | 0.84[CEU][hapmap] |
| rs13020391 | 0.92[ASN][1000 genomes] |
| rs13399246 | 0.88[ASN][1000 genomes] |
| rs13424679 | 0.85[ASN][1000 genomes] |
| rs13429408 | 0.84[CEU][hapmap] |
| rs1473901 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1870123 | 0.94[ASN][1000 genomes] |
| rs1870124 | 0.93[ASN][1000 genomes] |
| rs1870125 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2014615 | 0.84[CHB][hapmap] |
| rs2015863 | 0.94[ASN][1000 genomes] |
| rs2168704 | 0.85[CEU][hapmap] |
| rs2382822 | 0.84[CHB][hapmap] |
| rs2382828 | 0.94[ASN][1000 genomes] |
| rs2382829 | 0.94[ASN][1000 genomes] |
| rs2891077 | 0.92[ASN][1000 genomes] |
| rs2891078 | 0.83[ASN][1000 genomes] |
| rs2891079 | 0.94[ASN][1000 genomes] |
| rs3731859 | 0.85[CEU][hapmap] |
| rs3731861 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];0.84[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4280446 | 0.94[ASN][1000 genomes] |
| rs4423579 | 0.94[ASN][1000 genomes] |
| rs4552182 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.84[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs4672884 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.89[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4672886 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.84[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs4791 | 0.85[CEU][hapmap] |
| rs4996257 | 0.84[CHB][hapmap] |
| rs57851860 | 0.91[ASN][1000 genomes] |
| rs62183964 | 0.94[ASN][1000 genomes] |
| rs62183995 | 0.92[ASN][1000 genomes] |
| rs6741757 | 0.93[ASN][1000 genomes] |
| rs736730 | 0.85[CEU][hapmap] |
| rs736731 | 0.85[CEU][hapmap] |
| rs7598430 | 0.95[CHB][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap];0.91[ASN][1000 genomes] |
| rs992157 | 0.85[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000238736 | Proximal transcriptional regulation |
| SLC11A1 | Distal transcriptional regulation |
| CTDSP1 | Distal transcriptional regulation |
| MIR26B | Distal transcriptional regulation |
| ENSG00000237281 | RNA binding protein mediated regulation |
| PNKD | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014