SNP Report
Basic Infomation
| Name | rs1870124 dbSNP |
|---|---|
| Location | chr:2,219187740 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10193189 | 0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10194082 | 0.98[ASN][1000 genomes] |
| rs10203039 | 0.98[ASN][1000 genomes] |
| rs10932774 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs13020391 | 0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs13399246 | 0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs13424679 | 0.90[ASN][1000 genomes] |
| rs1473901 | 0.98[ASN][1000 genomes] |
| rs1870123 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1870125 | 0.95[ASN][1000 genomes] |
| rs2015863 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2382828 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2382829 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2891077 | 0.98[ASN][1000 genomes] |
| rs2891078 | 0.86[ASN][1000 genomes] |
| rs2891079 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3731861 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4280446 | 0.86[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4423579 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4552182 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4672884 | 0.96[ASN][1000 genomes] |
| rs4672886 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs57851860 | 0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs62183964 | 0.86[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs62183995 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6741757 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7598430 | 0.87[ASN][1000 genomes] |
| rs897877 | 0.93[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PNKD | Proximal transcriptional regulation |
| PNKD | Distal transcriptional regulation |
| RNU4-2 | Distal transcriptional regulation |
| RNU4-1 | Distal transcriptional regulation |
| ARPC2 | Distal transcriptional regulation |
| AAMP | Distal transcriptional regulation |
| TMBIM1 | Distal transcriptional regulation |
| SLC11A1 | Distal transcriptional regulation |
| CTDSP1 | Distal transcriptional regulation |
| MIR26B | Distal transcriptional regulation |
| ENSG00000230580 | Distal transcriptional regulation |
| C2orf62 | Distal transcriptional regulation |
| ENSG00000237281 | Distal transcriptional regulation |
| ENSG00000225062 | Distal transcriptional regulation |
| VIL1 | Distal transcriptional regulation |
| FAM65A | Distal transcriptional regulation |
| PNKD | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014