SNP Report
Basic Infomation
| Name | rs873395 dbSNP |
|---|---|
| Location | chr:10,82037215 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 79)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1047952 | 1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs10736342 | 0.94[ASN][1000 genomes] |
| rs10749550 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10749551 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10749560 | 0.94[ASN][1000 genomes] |
| rs10749562 | 1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10749569 | 0.94[ASN][1000 genomes] |
| rs10749595 | 0.81[ASN][1000 genomes] |
| rs10788545 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10788546 | 0.89[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.84[TSI][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10788576 | 0.94[ASN][1000 genomes] |
| rs10788586 | 0.85[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs10887711 | 0.88[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10887718 | 1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs10887838 | 0.81[ASN][1000 genomes] |
| rs1143694 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12242871 | 1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs12411742 | 0.94[ASN][1000 genomes] |
| rs1340374 | 0.94[ASN][1000 genomes] |
| rs1340375 | 0.85[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs1340376 | 0.85[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs1340379 | 0.94[ASN][1000 genomes] |
| rs1340380 | 0.85[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs1340384 | 1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs1361458 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1417219 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1417221 | 0.84[ASW][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs1538819 | 0.94[ASN][1000 genomes] |
| rs1572819 | 0.84[ASW][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs1815651 | 0.81[ASN][1000 genomes] |
| rs1870142 | 0.82[ASW][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs1890578 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1890889 | 0.84[ASW][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs1890890 | 1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs1934692 | 0.85[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs1934693 | 1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs1934694 | 0.85[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs1934695 | 0.85[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs1934696 | 1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs1972370 | 0.94[ASN][1000 genomes] |
| rs1972371 | 0.94[ASN][1000 genomes] |
| rs2050824 | 1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs2185426 | 1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs2185427 | 0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2236569 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.96[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2282367 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2342812 | 1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs2342813 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2678634 | 0.85[JPT][hapmap] |
| rs3802637 | 1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs3802638 | 1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs4258322 | 1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs4468295 | 0.94[ASN][1000 genomes] |
| rs4536152 | 0.85[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs4601708 | 0.94[ASN][1000 genomes] |
| rs4934038 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4934083 | 1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs4934139 | 0.85[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs4934153 | 1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs4934169 | 0.85[CHD][hapmap] |
| rs6585944 | 0.94[ASN][1000 genomes] |
| rs6585946 | 1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs6585947 | 0.94[ASN][1000 genomes] |
| rs6585986 | 1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs7077854 | 1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs7078075 | 0.81[ASN][1000 genomes] |
| rs7082102 | 1.00[ASW][hapmap];0.85[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7082705 | 0.85[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs7089003 | 1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs7098045 | 0.94[ASN][1000 genomes] |
| rs756208 | 0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7899791 | 1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs7900214 | 0.85[JPT][hapmap] |
| rs7903701 | 0.94[ASN][1000 genomes] |
| rs9285726 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9420349 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9420359 | 0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9421464 | 1.00[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs946892 | 0.94[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MAT1A | Proximal transcriptional regulation |
| MAT1A | Distal transcriptional regulation |
| MAT1A | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014