SNP Report
Basic Infomation
| Name | rs869402 dbSNP |
|---|---|
| Location | chr:17,38068043 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 80)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1008723 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1011082 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1031458 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1031460 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10445308 | 0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.87[MEX][hapmap] |
| rs10852935 | 0.84[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10852936 | 0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.96[ASN][1000 genomes] |
| rs11078925 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs11078926 | 0.86[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];0.85[TSI][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11078927 | 0.86[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.91[MEX][hapmap];0.80[TSI][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11078928 | 0.86[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11557466 | 0.83[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs11557467 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11650661 | 0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11651596 | 0.81[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11655198 | 0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11655292 | 0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11658278 | 0.83[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11870965 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs12603332 | 0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12709365 | 0.96[ASN][1000 genomes] |
| rs12936231 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap];0.96[ASN][1000 genomes] |
| rs12939457 | 0.85[ASN][1000 genomes] |
| rs12939832 | 0.86[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12946393 | 0.85[ASN][1000 genomes] |
| rs12946510 | 0.95[CHB][hapmap];0.94[CHD][hapmap];0.83[MEX][hapmap] |
| rs12949100 | 0.82[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs13380815 | 0.96[ASN][1000 genomes] |
| rs1453559 | 0.94[ASN][1000 genomes] |
| rs2290400 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2305479 | 0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.83[MEX][hapmap];0.83[MKK][hapmap];0.89[TSI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2305480 | 0.86[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.83[MEX][hapmap];0.90[MKK][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2872516 | 0.96[ASN][1000 genomes] |
| rs34120102 | 0.84[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs34189114 | 0.84[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs35736272 | 0.84[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs36000226 | 0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs36095411 | 0.81[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3744246 | 0.82[CHD][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs3816470 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap] |
| rs4065275 | 0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4794820 | 0.90[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs4795397 | 0.82[CEU][hapmap];0.94[ASN][1000 genomes] |
| rs4795399 | 0.82[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4795400 | 1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.96[MEX][hapmap];0.95[MKK][hapmap];0.85[TSI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4795401 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4795402 | 0.83[CHD][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs4795403 | 0.83[CHD][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs4795404 | 0.83[CHD][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs4795405 | 0.91[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap];0.95[ASN][1000 genomes] |
| rs56380902 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62067034 | 0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6503524 | 0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7213668 | 0.84[ASN][1000 genomes] |
| rs7216389 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7216558 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7219923 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7221605 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7221814 | 0.83[ASN][1000 genomes] |
| rs7224129 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7224908 | 0.85[ASN][1000 genomes] |
| rs8065777 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8069176 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap];0.96[ASN][1000 genomes] |
| rs8074437 | 0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs8076131 | 1.00[ASW][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs883770 | 0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs907091 | 0.96[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];0.87[MEX][hapmap] |
| rs907092 | 0.86[ASW][hapmap];0.82[CEU][hapmap];0.91[CHD][hapmap];0.87[MEX][hapmap] |
| rs921649 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs921650 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9303277 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.87[MEX][hapmap] |
| rs9303279 | 0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9303280 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9303281 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9635726 | 0.86[CHB][hapmap];0.82[CHD][hapmap] |
| rs9891174 | 0.96[ASN][1000 genomes] |
| rs9903250 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9905959 | 0.87[ASN][1000 genomes] |
| rs9909593 | 0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.87[MEX][hapmap];0.80[TSI][hapmap] |
| rs9916765 | 0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| GSDMB | Proximal transcriptional regulation |
| GSDMB | Distal transcriptional regulation |
| PSMD3 | Distal transcriptional regulation |
| GSDMB | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 19)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014