SNP Report
Basic Infomation
| Name | rs12946510 dbSNP |
|---|---|
| Location | chr:17,37912377 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 42)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1008723 | 0.95[CHB][hapmap];0.92[CHD][hapmap];0.83[TSI][hapmap] |
| rs10445308 | 0.94[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10852936 | 0.84[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];0.82[TSI][hapmap] |
| rs11078921 | 0.80[JPT][hapmap] |
| rs11078925 | 0.89[CEU][hapmap];0.95[CHB][hapmap] |
| rs11078926 | 0.89[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap] |
| rs11078927 | 0.89[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap] |
| rs11557466 | 0.91[CEU][hapmap];0.95[CHB][hapmap] |
| rs11557467 | 0.95[CHB][hapmap];0.97[CHD][hapmap] |
| rs11658993 | 0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11870965 | 0.89[CEU][hapmap];0.95[CHB][hapmap] |
| rs12603332 | 0.90[CHB][hapmap] |
| rs12936231 | 0.95[CHB][hapmap];0.97[CHD][hapmap] |
| rs12942330 | 0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2290400 | 0.95[CHB][hapmap];0.91[CHD][hapmap] |
| rs2305479 | 0.95[CHB][hapmap];0.94[CHD][hapmap] |
| rs2305480 | 0.89[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.83[GIH][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap] |
| rs2313430 | 0.98[ASN][1000 genomes] |
| rs2941519 | 0.82[ASN][1000 genomes] |
| rs2941522 | 0.99[ASN][1000 genomes] |
| rs2952140 | 0.97[ASN][1000 genomes] |
| rs2952144 | 0.88[ASN][1000 genomes] |
| rs3816470 | 0.95[CHB][hapmap];0.97[CHD][hapmap];0.80[MEX][hapmap] |
| rs4794820 | 0.85[CHB][hapmap];0.81[JPT][hapmap] |
| rs4795395 | 0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4795397 | 0.95[CEU][hapmap] |
| rs4795400 | 0.88[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap] |
| rs4795405 | 0.86[CHB][hapmap];0.89[CHD][hapmap];0.91[MEX][hapmap] |
| rs7216389 | 0.95[CHB][hapmap];0.94[CHD][hapmap];0.83[MEX][hapmap] |
| rs7219923 | 0.91[CHB][hapmap];0.94[CHD][hapmap];0.83[MEX][hapmap] |
| rs7224129 | 0.86[CHB][hapmap];0.89[CHD][hapmap];0.83[MEX][hapmap] |
| rs8069176 | 0.89[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.83[GIH][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap] |
| rs8076131 | 0.81[CEU][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap];0.87[MEX][hapmap] |
| rs869402 | 0.95[CHB][hapmap];0.94[CHD][hapmap];0.83[MEX][hapmap] |
| rs907091 | 0.95[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap];0.99[ASN][1000 genomes] |
| rs907092 | 0.92[CEU][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9303277 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.89[ASN][1000 genomes] |
| rs9303280 | 0.94[CHB][hapmap] |
| rs9303281 | 0.95[CHB][hapmap];0.94[CHD][hapmap];0.83[MEX][hapmap] |
| rs9635726 | 0.82[CHB][hapmap];0.82[CHD][hapmap] |
| rs9747973 | 0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9909593 | 0.88[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.83[TSI][hapmap];0.91[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000264198 | Distal transcriptional regulation |
| ENSG00000214546 | Distal transcriptional regulation |
| STARD3 | Distal transcriptional regulation |
| ERBB2 | Distal transcriptional regulation |
| GRB7 | Distal transcriptional regulation |
| MIEN1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 12)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014