SNP Report
Basic Infomation
| Name | rs861275 dbSNP |
|---|---|
| Location | chr:1,201252701 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10920169 | 1.00[JPT][hapmap] |
| rs10920173 | 1.00[JPT][hapmap] |
| rs1257394 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs1341944 | 1.00[JPT][hapmap] |
| rs1626760 | 1.00[JPT][hapmap] |
| rs16848325 | 1.00[JPT][hapmap] |
| rs16848334 | 1.00[JPT][hapmap] |
| rs2268147 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs3753974 | 1.00[ASN][1000 genomes] |
| rs700468 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs832163 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs832164 | 0.93[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs832168 | 0.93[CEU][hapmap];0.82[CHB][hapmap];0.81[EUR][1000 genomes] |
| rs832171 | 1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs832172 | 0.82[EUR][1000 genomes] |
| rs832173 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs832174 | 0.93[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PKP1 | Proximal transcriptional regulation |
| LAD1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014