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rVarBase
SNP Report
Basic Infomation
Name
rs1257394  
dbSNP
Location
chr:1,201254116
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10920169
1.00[JPT][hapmap]
rs10920173
1.00[JPT][hapmap]
rs1341944
1.00[JPT][hapmap]
rs1626760
1.00[JPT][hapmap]
rs16848325
1.00[JPT][hapmap]
rs16848334
1.00[JPT][hapmap]
rs2268147
1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3753974
1.00[ASN][1000 genomes]
rs832163
1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs832168
0.82[CHB][hapmap]
rs832174
0.82[CHB][hapmap]
rs861275
1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
PHLDA3
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
eQTL related gene
Source
ADORA1
SCAN
PRELP
SCAN