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rVarBase
SNP Report
Basic Infomation
Name
rs840947  
dbSNP
Location
chr:2,65716616
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 4)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs840943
0.91[CHB][hapmap];0.95[CHD][hapmap];0.82[JPT][hapmap];0.85[MKK][hapmap];0.92[ASN][1000 genomes]
rs840944
0.91[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs840945
0.92[ASN][1000 genomes]
rs840946
0.92[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
ENSG00000204929
Distal transcriptional regulation
ENSG00000204929
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
eQTL related gene
Source
CHST10
SCAN
PLEK
SCAN
PROKR1
SCAN