SNP Report
Basic Infomation
| Name | rs8006890 dbSNP |
|---|---|
| Location | chr:14,69123935 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10135342 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10873215 | 0.82[CEU][hapmap];0.81[MEX][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs11158754 | 0.84[EUR][1000 genomes] |
| rs11158755 | 0.84[EUR][1000 genomes] |
| rs11158756 | 0.84[EUR][1000 genomes] |
| rs11629204 | 0.84[EUR][1000 genomes] |
| rs1474960 | 0.88[CEU][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs17835218 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs17835244 | 0.88[CEU][hapmap];0.94[AMR][1000 genomes] |
| rs2877496 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4899250 | 0.82[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs55767067 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs61987113 | 0.84[EUR][1000 genomes] |
| rs61987118 | 0.86[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RAD51B | Distal transcriptional regulation |
| ZFP36L1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014