SNP Report
Basic Infomation
| Name | rs7896688 dbSNP |
|---|---|
| Location | chr:10,94211896 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11815736 | 0.87[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11819282 | 1.00[EUR][1000 genomes] |
| rs12267150 | 1.00[EUR][1000 genomes] |
| rs17107514 | 1.00[AMR][1000 genomes] |
| rs1889894 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6583818 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7067733 | 0.87[MKK][hapmap];0.94[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs7073957 | 1.00[EUR][1000 genomes] |
| rs7098638 | 1.00[EUR][1000 genomes] |
| rs7898027 | 1.00[EUR][1000 genomes] |
| rs7910569 | 1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7911751 | 1.00[EUR][1000 genomes] |
| rs7914114 | 1.00[EUR][1000 genomes] |
| rs7915349 | 0.87[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7917817 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IDE | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014