SNP Report
Basic Infomation
| Name | rs7776158 dbSNP |
|---|---|
| Location | chr:6,21165278 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 35)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2125570 | 0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28360551 | 0.98[ASN][1000 genomes] |
| rs6456398 | 0.87[EUR][1000 genomes] |
| rs6456400 | 0.91[EUR][1000 genomes] |
| rs6901380 | 0.95[EUR][1000 genomes] |
| rs6906201 | 0.95[EUR][1000 genomes] |
| rs6913868 | 0.95[EUR][1000 genomes] |
| rs6914598 | 0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6916053 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6916577 | 0.95[EUR][1000 genomes] |
| rs6931316 | 0.95[EUR][1000 genomes] |
| rs6935079 | 0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6935117 | 0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6935124 | 0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6937555 | 0.95[EUR][1000 genomes] |
| rs7739578 | 0.96[EUR][1000 genomes] |
| rs7739596 | 0.96[EUR][1000 genomes] |
| rs7752602 | 0.95[EUR][1000 genomes] |
| rs7752788 | 0.95[EUR][1000 genomes] |
| rs9295496 | 0.84[EUR][1000 genomes] |
| rs9295499 | 0.92[EUR][1000 genomes] |
| rs9348457 | 0.95[EUR][1000 genomes] |
| rs9348458 | 0.98[ASN][1000 genomes] |
| rs9350323 | 0.93[EUR][1000 genomes] |
| rs9350324 | 0.92[EUR][1000 genomes] |
| rs9350325 | 0.95[EUR][1000 genomes] |
| rs9356769 | 0.90[EUR][1000 genomes] |
| rs9358395 | 0.95[EUR][1000 genomes] |
| rs9366382 | 0.95[EUR][1000 genomes] |
| rs9366383 | 0.94[EUR][1000 genomes] |
| rs9366384 | 0.92[EUR][1000 genomes] |
| rs9368282 | 0.82[EUR][1000 genomes] |
| rs9368283 | 0.95[EUR][1000 genomes] |
| rs9368284 | 0.98[ASN][1000 genomes] |
| rs9368285 | 0.98[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014