SNP Report

Basic Infomation

Name	rs2125570 dbSNP
Location	chr:6,21166705
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 35)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs28360551	0.98[ASN][1000 genomes]
rs6456398	0.86[EUR][1000 genomes]
rs6456400	0.88[EUR][1000 genomes]
rs6901380	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs6906201	0.92[EUR][1000 genomes]
rs6913868	0.92[EUR][1000 genomes]
rs6914598	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6916053	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6916577	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs6931316	0.91[CEU][hapmap];0.89[TSI][hapmap];0.92[EUR][1000 genomes]
rs6935079	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6935117	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6935124	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6937555	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7739578	0.96[CEU][hapmap];0.91[TSI][hapmap];0.93[EUR][1000 genomes]
rs7739596	1.00[CEU][hapmap];0.94[TSI][hapmap];0.93[EUR][1000 genomes]
rs7752602	1.00[CEU][hapmap];0.92[TSI][hapmap];0.92[EUR][1000 genomes]
rs7752788	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7776158	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295496	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs9295499	0.90[EUR][1000 genomes]
rs9348457	1.00[CEU][hapmap];0.92[TSI][hapmap];0.92[EUR][1000 genomes]
rs9348458	0.98[ASN][1000 genomes]
rs9350323	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9350324	0.90[CEU][hapmap];0.91[EUR][1000 genomes]
rs9350325	0.92[EUR][1000 genomes]
rs9356769	0.89[EUR][1000 genomes]
rs9358395	1.00[CEU][hapmap];0.92[TSI][hapmap];0.92[EUR][1000 genomes]
rs9366382	0.92[EUR][1000 genomes]
rs9366383	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9366384	0.90[EUR][1000 genomes]
rs9368282	0.82[EUR][1000 genomes]
rs9368283	1.00[CEU][hapmap];0.92[TSI][hapmap];0.92[EUR][1000 genomes]
rs9368284	0.98[ASN][1000 genomes]
rs9368285	0.98[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)