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rVarBase
SNP Report
Basic Infomation
Name
rs7762660
dbSNP
Location
chr:6,21092363
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10946428
0.86[EUR][1000 genomes]
rs11964144
0.87[EUR][1000 genomes]
rs13219886
0.82[EUR][1000 genomes]
rs17834555
0.85[EUR][1000 genomes]
rs4593348
0.86[EUR][1000 genomes]
rs6456395
0.86[EUR][1000 genomes]
rs6456396
0.87[EUR][1000 genomes]
rs6904348
0.88[EUR][1000 genomes]
rs7762670
0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
CDKAL1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)