SNP Report
Basic Infomation
| Name | rs7733814 dbSNP |
|---|---|
| Location | chr:5,131556309 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10052046 | 0.99[ASN][1000 genomes] |
| rs10075459 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs10076758 | 0.93[ASN][1000 genomes] |
| rs10478998 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs12653783 | 0.99[ASN][1000 genomes] |
| rs12657965 | 0.99[ASN][1000 genomes] |
| rs2278398 | 1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MKK][hapmap];0.95[ASN][1000 genomes] |
| rs2301579 | 0.99[ASN][1000 genomes] |
| rs28814649 | 0.82[ASN][1000 genomes] |
| rs2897096 | 0.81[ASN][1000 genomes] |
| rs35696821 | 0.85[ASN][1000 genomes] |
| rs3749756 | 0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MKK][hapmap];0.95[ASN][1000 genomes] |
| rs3792894 | 1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs3805681 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs3805683 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs3828675 | 0.95[ASN][1000 genomes] |
| rs4361509 | 1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];0.95[ASN][1000 genomes] |
| rs6596070 | 0.99[ASN][1000 genomes] |
| rs6896703 | 1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.91[ASN][1000 genomes] |
| rs715285 | 1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.83[ASN][1000 genomes] |
| rs7701237 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs7703009 | 0.95[ASN][1000 genomes] |
| rs7733502 | 0.97[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| P4HA2 | Distal transcriptional regulation |
| ENSG00000224431 | Distal transcriptional regulation |
| P4HA2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014