SNP Report
Basic Infomation
| Name | rs7593292 dbSNP |
|---|---|
| Location | chr:2,103296762 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1011781 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1011782 | 1.00[ASW][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13406732 | 1.00[AMR][1000 genomes] |
| rs17027347 | 1.00[AMR][1000 genomes] |
| rs17027648 | 1.00[AMR][1000 genomes] |
| rs17027735 | 1.00[ASW][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17027747 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58584044 | 1.00[AMR][1000 genomes] |
| rs58634634 | 1.00[AMR][1000 genomes] |
| rs59734507 | 1.00[AMR][1000 genomes] |
| rs6704840 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6705439 | 1.00[ASW][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6708290 | 1.00[AMR][1000 genomes] |
| rs6708944 | 1.00[AMR][1000 genomes] |
| rs6724541 | 1.00[AMR][1000 genomes] |
| rs6725861 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6734539 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6735965 | 1.00[AMR][1000 genomes] |
| rs6737329 | 1.00[AMR][1000 genomes] |
| rs6738363 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6742280 | 1.00[AMR][1000 genomes] |
| rs6752045 | 1.00[AMR][1000 genomes] |
| rs73944360 | 1.00[AMR][1000 genomes] |
| rs73944362 | 1.00[AMR][1000 genomes] |
| rs73944375 | 1.00[AMR][1000 genomes] |
| rs73944376 | 1.00[AMR][1000 genomes] |
| rs7576925 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7595487 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC9A2 | Proximal transcriptional regulation |
| SLC9A2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| TTC31 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014