SNP Report
Basic Infomation
| Name | rs17027347 dbSNP |
|---|---|
| Location | chr:2,103138304 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 37)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1011781 | 1.00[AMR][1000 genomes] |
| rs1011782 | 1.00[AMR][1000 genomes] |
| rs13406732 | 1.00[AMR][1000 genomes] |
| rs17027275 | 1.00[ASW][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17027648 | 1.00[AMR][1000 genomes] |
| rs17027735 | 1.00[AMR][1000 genomes] |
| rs17027747 | 1.00[AMR][1000 genomes] |
| rs41484147 | 1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap] |
| rs58584044 | 1.00[AMR][1000 genomes] |
| rs58634634 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59734507 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60508702 | 1.00[AMR][1000 genomes] |
| rs61731288 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6704840 | 1.00[AMR][1000 genomes] |
| rs6705439 | 1.00[AMR][1000 genomes] |
| rs6708290 | 1.00[AMR][1000 genomes] |
| rs6708944 | 1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6724541 | 1.00[AMR][1000 genomes] |
| rs6725861 | 1.00[AMR][1000 genomes] |
| rs6734539 | 1.00[AMR][1000 genomes] |
| rs6735965 | 1.00[AMR][1000 genomes] |
| rs6737329 | 1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6738363 | 1.00[AMR][1000 genomes] |
| rs6742280 | 1.00[ASW][hapmap];1.00[AMR][1000 genomes] |
| rs6752045 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6759587 | 1.00[AMR][1000 genomes] |
| rs73944323 | 1.00[AMR][1000 genomes] |
| rs73944350 | 1.00[AMR][1000 genomes] |
| rs73944354 | 1.00[AMR][1000 genomes] |
| rs73944356 | 1.00[AMR][1000 genomes] |
| rs73944360 | 1.00[AMR][1000 genomes] |
| rs73944362 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73944375 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73944376 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7576925 | 1.00[AMR][1000 genomes] |
| rs7593292 | 1.00[AMR][1000 genomes] |
| rs7595487 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC9A2 | Distal transcriptional regulation |
| SLC9A4 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014