SNP Report

Basic Infomation

Name	rs7497457 dbSNP
Location	chr:15,68132723
Allele	C/A

LD-proxy of rSNPs(r²>0.8) (count: 17)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11631864	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12441598	0.88[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1478941	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1564278	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3784713	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3784716	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4254278	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4258559	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4386088	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4508380	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4539549	0.84[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs4776378	0.97[ASN][1000 genomes]
rs4776379	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4776988	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4776989	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7183168	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72751453	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
RNU6-1	Proximal transcriptional regulation
ENSG00000245719	Proximal transcriptional regulation
LYSMD4	Distal transcriptional regulation
RNU5E-1	Distal transcriptional regulation
ENSG00000270103	Distal transcriptional regulation
C11orf80	Distal transcriptional regulation
PCBP1-AS1	Distal transcriptional regulation
PCBP1	Distal transcriptional regulation
ARIH2	Distal transcriptional regulation
CCNL1	Distal transcriptional regulation
AZI2	Distal transcriptional regulation
VDAC1	Distal transcriptional regulation
HIST1H1C	Distal transcriptional regulation
HSPA5	Distal transcriptional regulation
TIMM17B	Distal transcriptional regulation
PQBP1	Distal transcriptional regulation
FANCI	Distal transcriptional regulation
DNAJA4	Distal transcriptional regulation
AAGAB	Distal transcriptional regulation
IQCH	Distal transcriptional regulation
IQCH-AS1	Distal transcriptional regulation
C15orf61	Distal transcriptional regulation
SKOR1	Distal transcriptional regulation
ENSG00000259410	Distal transcriptional regulation
FEM1B	Distal transcriptional regulation
MAP2K5	Distal transcriptional regulation
ENSG00000260657	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)