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rVarBase
SNP Report
Basic Infomation
Name
rs4258559  
dbSNP
Location
chr:15,68136177
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1478941
0.84[ASN][1000 genomes]
rs1564278
1.00[JPT][hapmap]
rs3784713
1.00[JPT][hapmap]
rs3784716
1.00[JPT][hapmap]
rs4254278
1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4776378
1.00[ASN][1000 genomes]
rs4776379
1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4776988
1.00[JPT][hapmap]
rs4776989
1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7183168
1.00[JPT][hapmap]
rs7497457
1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
RNU6-1
Proximal transcriptional regulation
ENSG00000245719
Proximal transcriptional regulation
ENSG00000245719
Distal transcriptional regulation
RNU6-1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)