SNP Report
Basic Infomation
| Name | rs7487637 dbSNP |
|---|---|
| Location | chr:12,48214825 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11168256 | 0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11168257 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11168258 | 0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11574052 | 1.00[ASN][1000 genomes] |
| rs12721362 | 0.81[AMR][1000 genomes] |
| rs17721101 | 1.00[ASN][1000 genomes] |
| rs55713656 | 1.00[ASN][1000 genomes] |
| rs55913294 | 0.83[AMR][1000 genomes] |
| rs73109811 | 1.00[ASN][1000 genomes] |
| rs7487602 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7973956 | 0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| HDAC7 | Proximal transcriptional regulation |
| MVD | Distal transcriptional regulation |
| SNAI3-AS1 | Distal transcriptional regulation |
| LSM3 | Distal transcriptional regulation |
| XPC | Distal transcriptional regulation |
| GRSF1 | Distal transcriptional regulation |
| RLIM | Distal transcriptional regulation |
| GAPDH | Distal transcriptional regulation |
| TBX3 | Distal transcriptional regulation |
| SLC48A1 | Distal transcriptional regulation |
| SPTSSB | Distal transcriptional regulation |
| ENSG00000201524 | Distal transcriptional regulation |
| RPAP3 | Distal transcriptional regulation |
| ENSG00000257433 | Distal transcriptional regulation |
| ENDOU | Distal transcriptional regulation |
| RAPGEF3 | Distal transcriptional regulation |
| HDAC7 | Distal transcriptional regulation |
| VDR | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014