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rVarBase
SNP Report
Basic Infomation
Name
rs11168257  
dbSNP
Location
chr:12,48217900
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11168256
1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168258
1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11574052
1.00[ASN][1000 genomes]
rs12721362
0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17721101
1.00[ASN][1000 genomes]
rs55713656
1.00[ASN][1000 genomes]
rs55913294
0.84[AMR][1000 genomes]
rs73109811
1.00[ASN][1000 genomes]
rs7487602
0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7487637
0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7973956
1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
HDAC7
Proximal transcriptional regulation
ENSG00000257488
Proximal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)