SNP Report
Basic Infomation
| Name | rs73258141 dbSNP |
|---|---|
| Location | chr:5,130504401 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs17132326 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17166242 | 1.00[EUR][1000 genomes] |
| rs57048051 | 1.00[EUR][1000 genomes] |
| rs58797151 | 1.00[EUR][1000 genomes] |
| rs73249242 | 1.00[EUR][1000 genomes] |
| rs73249258 | 1.00[EUR][1000 genomes] |
| rs73249301 | 1.00[EUR][1000 genomes] |
| rs73251104 | 1.00[EUR][1000 genomes] |
| rs73251113 | 1.00[EUR][1000 genomes] |
| rs73253032 | 1.00[EUR][1000 genomes] |
| rs73258164 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73260144 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73262364 | 1.00[EUR][1000 genomes] |
| rs73262377 | 1.00[EUR][1000 genomes] |
| rs73262399 | 1.00[EUR][1000 genomes] |
| rs73266379 | 1.00[EUR][1000 genomes] |
| rs7705623 | 1.00[AMR][1000 genomes] |
| rs7718693 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| HINT1 | Proximal transcriptional regulation |
| LYRM7 | Proximal transcriptional regulation |
| HINT1 | Distal transcriptional regulation |
| CDC42SE2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014