SNP Report
Basic Infomation
| Name | rs7308403 dbSNP |
|---|---|
| Location | chr:12,40946681 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 32)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10431578 | 0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11177162 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11177169 | 0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11177179 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11177184 | 0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11177260 | 0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11561483 | 0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11832449 | 0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11838212 | 0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12227829 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12231675 | 0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12231820 | 0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1463738 | 0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1492315 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1965309 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2204681 | 0.82[ASN][1000 genomes] |
| rs3751167 | 0.88[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3751168 | 0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3751169 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3751175 | 0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3829294 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3920440 | 0.80[AFR][1000 genomes];0.86[ASN][1000 genomes] |
| rs5002282 | 0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58355196 | 0.86[ASN][1000 genomes] |
| rs66485183 | 0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs66518640 | 0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7133098 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7304329 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs73269994 | 0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73271812 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7979493 | 0.86[ASN][1000 genomes] |
| rs8181694 | 0.81[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MUC19 | Proximal transcriptional regulation |
| MUC19 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014