SNP Report
Basic Infomation
| Name | rs72892270 dbSNP |
|---|---|
| Location | chr:1,1071677 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10126047 | 1.00[EUR][1000 genomes] |
| rs11260569 | 1.00[EUR][1000 genomes] |
| rs11466690 | 1.00[EUR][1000 genomes] |
| rs28488099 | 1.00[EUR][1000 genomes] |
| rs28687571 | 1.00[EUR][1000 genomes] |
| rs28695703 | 1.00[EUR][1000 genomes] |
| rs61730205 | 1.00[EUR][1000 genomes] |
| rs61740392 | 1.00[EUR][1000 genomes] |
| rs6666790 | 1.00[EUR][1000 genomes] |
| rs72896205 | 1.00[EUR][1000 genomes] |
| rs72896210 | 1.00[EUR][1000 genomes] |
| rs74048004 | 1.00[EUR][1000 genomes] |
| rs74048005 | 1.00[EUR][1000 genomes] |
| rs7415355 | 1.00[EUR][1000 genomes] |
| rs7416953 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000223823 | Proximal transcriptional regulation |
| HES4 | Distal transcriptional regulation |
| TTLL10 | Distal transcriptional regulation |
| PPM1D | Distal transcriptional regulation |
| RNF223 | Distal transcriptional regulation |
| ACAP3 | Distal transcriptional regulation |
| C1orf159 | Distal transcriptional regulation |
| SDF4 | Distal transcriptional regulation |
| B3GALT6 | Distal transcriptional regulation |
| TNFRSF18 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014