SNP Report
Basic Infomation
| Name | rs61730205 dbSNP |
|---|---|
| Location | chr:1,1226851 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11260569 | 1.00[EUR][1000 genomes] |
| rs11466690 | 1.00[EUR][1000 genomes] |
| rs28488099 | 1.00[EUR][1000 genomes] |
| rs34173019 | 1.00[EUR][1000 genomes] |
| rs35481025 | 1.00[EUR][1000 genomes] |
| rs36013061 | 1.00[EUR][1000 genomes] |
| rs61740392 | 1.00[EUR][1000 genomes] |
| rs6666790 | 1.00[EUR][1000 genomes] |
| rs72892270 | 1.00[EUR][1000 genomes] |
| rs72896205 | 1.00[EUR][1000 genomes] |
| rs72896210 | 1.00[EUR][1000 genomes] |
| rs74045416 | 0.84[AFR][1000 genomes] |
| rs74047249 | 1.00[EUR][1000 genomes] |
| rs7415355 | 1.00[EUR][1000 genomes] |
| rs7416953 | 1.00[EUR][1000 genomes] |
| rs904583 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SAMD11 | Distal transcriptional regulation |
| NOC2L | Distal transcriptional regulation |
| HES4 | Distal transcriptional regulation |
| UBE2J2 | Distal transcriptional regulation |
| ACAP3 | Distal transcriptional regulation |
| RNF223 | Distal transcriptional regulation |
| C1orf159 | Distal transcriptional regulation |
| ENSG00000223823 | Distal transcriptional regulation |
| ENSG00000230415 | Distal transcriptional regulation |
| SCNN1D | Distal transcriptional regulation |
| SCNN1D | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014