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rVarBase
SNP Report
Basic Infomation
Name
rs7269859  
dbSNP
Location
chr:20,44905256
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs16991059
1.00[MEX][hapmap]
rs6017761
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6032683
1.00[GIH][hapmap]
rs6032736
1.00[GIH][hapmap];0.90[LWK][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap]
rs6032741
0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
CDH22
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
eQTL related gene
Source
MYBL2
SCAN
MOCOS
seeQTL