SNP Report
Basic Infomation
| Name | rs72643559 dbSNP |
|---|---|
| Location | chr:11,61620274 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 52)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs102274 | 0.84[ASN][1000 genomes] |
| rs102275 | 0.84[ASN][1000 genomes] |
| rs108499 | 0.82[ASN][1000 genomes] |
| rs1535 | 0.88[ASN][1000 genomes] |
| rs174528 | 0.83[ASN][1000 genomes] |
| rs174529 | 0.82[ASN][1000 genomes] |
| rs174530 | 0.82[ASN][1000 genomes] |
| rs174533 | 0.84[ASN][1000 genomes] |
| rs174534 | 0.83[ASN][1000 genomes] |
| rs174535 | 0.84[ASN][1000 genomes] |
| rs174536 | 0.84[ASN][1000 genomes] |
| rs174537 | 0.84[ASN][1000 genomes] |
| rs174538 | 0.82[ASN][1000 genomes] |
| rs174541 | 0.84[ASN][1000 genomes] |
| rs174545 | 0.84[ASN][1000 genomes] |
| rs174546 | 0.84[ASN][1000 genomes] |
| rs174547 | 0.84[ASN][1000 genomes] |
| rs174550 | 0.84[ASN][1000 genomes] |
| rs174553 | 0.84[ASN][1000 genomes] |
| rs174554 | 0.86[ASN][1000 genomes] |
| rs174555 | 0.80[ASN][1000 genomes] |
| rs174556 | 0.80[ASN][1000 genomes] |
| rs174560 | 0.80[ASN][1000 genomes] |
| rs174561 | 0.80[ASN][1000 genomes] |
| rs174562 | 0.86[ASN][1000 genomes] |
| rs174564 | 0.86[ASN][1000 genomes] |
| rs174565 | 0.85[ASN][1000 genomes] |
| rs174566 | 0.88[ASN][1000 genomes] |
| rs174567 | 0.88[ASN][1000 genomes] |
| rs174568 | 0.88[ASN][1000 genomes] |
| rs174570 | 0.86[ASN][1000 genomes] |
| rs174574 | 0.88[ASN][1000 genomes] |
| rs174576 | 0.93[ASN][1000 genomes] |
| rs174577 | 0.93[ASN][1000 genomes] |
| rs174578 | 0.93[ASN][1000 genomes] |
| rs174580 | 0.93[ASN][1000 genomes] |
| rs174581 | 0.93[ASN][1000 genomes] |
| rs174583 | 0.92[ASN][1000 genomes] |
| rs174584 | 0.93[ASN][1000 genomes] |
| rs174592 | 0.94[ASN][1000 genomes] |
| rs174594 | 0.96[ASN][1000 genomes] |
| rs174598 | 0.95[ASN][1000 genomes] |
| rs174599 | 0.96[ASN][1000 genomes] |
| rs174600 | 0.94[ASN][1000 genomes] |
| rs174601 | 0.96[ASN][1000 genomes] |
| rs28456 | 0.83[ASN][1000 genomes] |
| rs4246215 | 0.84[ASN][1000 genomes] |
| rs509360 | 0.82[ASN][1000 genomes] |
| rs57535397 | 1.00[EUR][1000 genomes] |
| rs72643557 | 1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs97384 | 0.90[ASN][1000 genomes] |
| rs99780 | 0.88[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FADS2 | Proximal transcriptional regulation |
| ENSG00000256914 | Distal transcriptional regulation |
| FADS1 | Distal transcriptional regulation |
| MIR1908 | Distal transcriptional regulation |
| FADS2 | Distal transcriptional regulation |
| FADS2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014