SNP Report
Basic Infomation
| Name | rs4246215 dbSNP |
|---|---|
| Location | chr:11,61564299 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 57)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs102274 | 0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs102275 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs108499 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1535 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs174528 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs174529 | 0.87[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs174530 | 0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs174533 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs174534 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs174535 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs174536 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs174537 | 1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.86[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs174538 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs174541 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs174544 | 0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs174545 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs174546 | 1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs174547 | 1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs174548 | 1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs174549 | 0.82[ASW][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs174550 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs174551 | 0.90[AFR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs174553 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs174554 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs174555 | 0.82[ASW][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs174556 | 0.82[ASW][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs174559 | 0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs174560 | 0.92[ASN][1000 genomes] |
| rs174561 | 0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs174562 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs174564 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs174565 | 0.96[ASN][1000 genomes] |
| rs174566 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs174567 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs174568 | 1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs174570 | 1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs174574 | 0.80[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs174576 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.83[TSI][hapmap];0.89[ASN][1000 genomes] |
| rs174577 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.83[TSI][hapmap];0.89[ASN][1000 genomes] |
| rs174578 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs174580 | 0.89[ASN][1000 genomes] |
| rs174581 | 0.89[ASN][1000 genomes] |
| rs174583 | 0.88[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.82[GIH][hapmap];0.87[ASN][1000 genomes] |
| rs174584 | 0.87[ASN][1000 genomes] |
| rs174589 | 0.85[MKK][hapmap] |
| rs174592 | 0.87[ASN][1000 genomes] |
| rs174594 | 0.86[ASN][1000 genomes] |
| rs174598 | 0.84[ASN][1000 genomes] |
| rs174599 | 0.85[ASN][1000 genomes] |
| rs174600 | 0.83[ASN][1000 genomes] |
| rs174601 | 1.00[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs2727270 | 1.00[YRI][hapmap] |
| rs28456 | 0.95[ASN][1000 genomes] |
| rs509360 | 1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs72643557 | 0.95[ASN][1000 genomes] |
| rs72643559 | 0.84[ASN][1000 genomes] |
| rs99780 | 0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TMEM258 | Proximal transcriptional regulation |
| FEN1 | Proximal transcriptional regulation |
| MIR611 | Proximal transcriptional regulation |
| MYRF | Distal transcriptional regulation |
| ENSG00000256428 | Distal transcriptional regulation |
| MIR611 | Distal transcriptional regulation |
| TMEM258 | Distal transcriptional regulation |
| FEN1 | Distal transcriptional regulation |
| FADS2 | Distal transcriptional regulation |
| FADS1 | Distal transcriptional regulation |
| MIR1908 | Distal transcriptional regulation |
| BEST1 | Distal transcriptional regulation |
| FADS3 | Distal transcriptional regulation |
| ENSG00000256914 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 12)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014