SNP Report
Basic Infomation
| Name | rs7259116 dbSNP |
|---|---|
| Location | chr:19,10585089 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10415088 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs1051738 | 0.85[EUR][1000 genomes] |
| rs11666164 | 0.85[EUR][1000 genomes] |
| rs11670508 | 0.90[EUR][1000 genomes] |
| rs11670704 | 0.81[EUR][1000 genomes] |
| rs11672021 | 0.80[EUR][1000 genomes] |
| rs12974442 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs12983921 | 0.81[EUR][1000 genomes] |
| rs35084366 | 0.90[EUR][1000 genomes] |
| rs35452057 | 0.84[EUR][1000 genomes] |
| rs58172634 | 0.85[EUR][1000 genomes] |
| rs60167376 | 0.84[EUR][1000 genomes] |
| rs62130736 | 0.84[EUR][1000 genomes] |
| rs62131887 | 0.90[ASN][1000 genomes] |
| rs62131889 | 0.91[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs7247481 | 0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7259088 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7259385 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7343087 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs74179926 | 0.86[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KEAP1 | Distal transcriptional regulation |
| CDKN2D | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014