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rVarBase
SNP Report
Basic Infomation
Name
rs7151054  
dbSNP
Location
chr:14,69219896
Allele
T/G
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11844909
0.82[YRI][hapmap]
rs1275049
1.00[MEX][hapmap]
rs194771
0.88[MEX][hapmap];0.84[TSI][hapmap];0.85[EUR][1000 genomes]
rs194774
0.85[EUR][1000 genomes]
rs194785
1.00[MEX][hapmap];0.84[TSI][hapmap];0.85[EUR][1000 genomes]
rs450420
1.00[MEX][hapmap]
rs4899257
0.85[CHB][hapmap];0.82[JPT][hapmap]
rs8016829
0.82[CHB][hapmap]
rs8021099
0.92[YRI][hapmap]
rs9635254
0.82[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
ZFP36L1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
eQTL related gene
Source
EGR3
SCAN