SNP Report
Basic Infomation
| Name | rs7146787 dbSNP |
|---|---|
| Location | chr:14,75696922 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs17103088 | 1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2003575 | 0.95[ASN][1000 genomes] |
| rs2359615 | 0.94[ASN][1000 genomes] |
| rs4899553 | 0.89[CHB][hapmap];0.96[CHD][hapmap];0.88[JPT][hapmap];0.85[MEX][hapmap];0.91[YRI][hapmap];0.94[ASN][1000 genomes] |
| rs4903296 | 0.94[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs4903297 | 0.94[CHB][hapmap];0.90[ASN][1000 genomes] |
| rs59124246 | 0.86[ASN][1000 genomes] |
| rs60699541 | 0.95[ASN][1000 genomes] |
| rs61128924 | 0.84[ASN][1000 genomes] |
| rs6574213 | 0.81[CEU][hapmap];0.89[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6574214 | 1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.88[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7159119 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs73313647 | 0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs741197 | 0.89[CHB][hapmap];0.92[CHD][hapmap];0.86[ASN][1000 genomes] |
| rs887890 | 0.89[CHB][hapmap];0.80[TSI][hapmap];0.90[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| HAUS5 | Distal transcriptional regulation |
| SURF6 | Distal transcriptional regulation |
| ENSG00000258820 | Distal transcriptional regulation |
| TMED10 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| AMDHD2 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014