SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 15)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs17103088	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs2003575	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2359615	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4903296	0.84[CHB][hapmap];0.84[ASN][1000 genomes]
rs4903297	0.94[CHB][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59124246	0.83[ASN][1000 genomes]
rs60699541	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61128924	0.82[ASN][1000 genomes]
rs6574213	0.81[CEU][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs6574214	0.84[CEU][hapmap];0.89[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.85[MEX][hapmap];0.81[MKK][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7146787	0.89[CHB][hapmap];0.96[CHD][hapmap];0.88[JPT][hapmap];0.85[MEX][hapmap];0.91[YRI][hapmap];0.94[ASN][1000 genomes]
rs7159119	0.89[ASN][1000 genomes]
rs73313647	0.89[ASN][1000 genomes]
rs741197	0.90[CHD][hapmap];0.84[ASN][1000 genomes]
rs887890	0.88[CHB][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000258820	Distal transcriptional regulation
TMED10	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 1)