SNP Report
Basic Infomation
| Name | rs7086627 dbSNP |
|---|---|
| Location | chr:10,82220597 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10749562 | 0.87[CEU][hapmap] |
| rs1870142 | 0.91[CEU][hapmap] |
| rs1934695 | 0.91[CEU][hapmap] |
| rs1993484 | 0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2050824 | 1.00[JPT][hapmap] |
| rs2185426 | 0.91[CEU][hapmap] |
| rs2343306 | 0.95[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3802637 | 0.86[CEU][hapmap] |
| rs3802638 | 0.90[CEU][hapmap] |
| rs4258322 | 0.91[CEU][hapmap] |
| rs4934083 | 0.91[CEU][hapmap] |
| rs4934139 | 0.90[CEU][hapmap] |
| rs4934153 | 0.91[CEU][hapmap] |
| rs4934169 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6585946 | 0.86[CEU][hapmap] |
| rs6585986 | 0.91[CEU][hapmap] |
| rs7082102 | 0.87[CEU][hapmap] |
| rs7082705 | 0.91[CEU][hapmap] |
| rs7098414 | 0.98[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7100689 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs946892 | 0.85[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000226659 | Distal transcriptional regulation |
| TSPAN14 | Distal transcriptional regulation |
| TSPAN14 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014