SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 10)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10791815	1.00[CEU][hapmap]
rs12224555	0.90[GIH][hapmap];1.00[MEX][hapmap]
rs12789598	0.90[GIH][hapmap];1.00[MEX][hapmap]
rs12794623	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2271446	0.90[GIH][hapmap];1.00[MEX][hapmap]
rs481574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs525141	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs677740	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71462337	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs872805	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
POLA2	Proximal transcriptional regulation
CDCA5	Distal transcriptional regulation
ZFPL1	Distal transcriptional regulation
POLA2	Distal transcriptional regulation
TM7SF2	Distal transcriptional regulation
NEAT1	Distal transcriptional regulation
ENSG00000254501	Distal transcriptional regulation
SYVN1	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)