SNP Report
Basic Infomation
| Name | rs6712418 dbSNP |
|---|---|
| Location | chr:2,65695395 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10186481 | 1.00[MEX][hapmap] |
| rs10186634 | 1.00[MEX][hapmap] |
| rs10190233 | 0.81[LWK][hapmap] |
| rs10197515 | 1.00[AMR][1000 genomes] |
| rs13396987 | 1.00[AMR][1000 genomes] |
| rs13397025 | 1.00[AMR][1000 genomes] |
| rs13397223 | 1.00[AMR][1000 genomes] |
| rs13411612 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13413791 | 1.00[AMR][1000 genomes] |
| rs13422208 | 1.00[AMR][1000 genomes] |
| rs17030233 | 1.00[MEX][hapmap] |
| rs36028876 | 0.83[AFR][1000 genomes] |
| rs56192453 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56297108 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7571298 | 1.00[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SPRED2 | Distal transcriptional regulation |
| ENSG00000204929 | Distal transcriptional regulation |
| ENSG00000204929 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| ALKBH2 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014