SNP Report
Basic Infomation
| Name | rs6669008 dbSNP |
|---|---|
| Location | chr:1,114166561 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10858011 | 0.82[CHD][hapmap] |
| rs1113523 | 0.82[CHD][hapmap] |
| rs1146182 | 0.82[CHD][hapmap] |
| rs1146187 | 0.85[CHD][hapmap] |
| rs1217192 | 0.82[CHD][hapmap] |
| rs1217200 | 0.85[CHD][hapmap] |
| rs1217201 | 0.82[CHD][hapmap] |
| rs1217226 | 0.82[CHD][hapmap] |
| rs1217227 | 0.82[CHD][hapmap] |
| rs1217228 | 0.82[CHD][hapmap] |
| rs1217234 | 0.82[CHD][hapmap] |
| rs1217236 | 0.80[CHD][hapmap] |
| rs1230658 | 0.85[CHD][hapmap] |
| rs1230659 | 0.84[CHD][hapmap] |
| rs12565589 | 0.85[CHD][hapmap] |
| rs12723023 | 0.83[AFR][1000 genomes] |
| rs12739970 | 0.83[AFR][1000 genomes] |
| rs12753075 | 0.81[AFR][1000 genomes] |
| rs1743605 | 0.85[CHD][hapmap] |
| rs1777237 | 0.85[CHD][hapmap] |
| rs1777241 | 0.84[CHD][hapmap] |
| rs1891969 | 0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4839331 | 1.00[YRI][hapmap];0.80[AFR][1000 genomes] |
| rs55912359 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6704054 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7514649 | 1.00[YRI][hapmap] |
| rs7517631 | 1.00[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MAGI3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014